API Reference

• Data sets
• Utility functions
• Quality assurance
• Core functions
• Stratified testing
• Nonparametric combination of tests
• Interrater reliability

permute provides permutation tests and confidence intervals for a variety of nonparametric testing and estimation problems, for a variety of randomization designs.

• Stratified and unstratified tests

• Test statistics in each stratum

• Methods of combining tests across strata

• Nonparametric combinations of tests

Problems/Methods:

1. The 2-sample problem

2. The n-sample problem

3. Tests for the slope in linear regression

4. Tests for quantiles

5. Tests of independence and association: runs tests, permutation association

6. Tests of exchangeability

7. Tests of symmetry: reflection, spherical

8. Permutation ANOVA

9. Goodness of fit tests

Confidence sets

1. Constant shifts

2. Proportional shifts

3. Monotone shifts

Links

UC Berkeley’s Statistics 240: Nonparametric and Robust Methods.

• 2015 course website

• Philip Stark’s lecture notes

“Permutation Tests for Complex Data: Theory, Applications and Software” by Fortunato Pesarin, Luigi Salmaso

• Publisher’s website

• Supplementary Material (i.e., code and data)

• NPC test code

“Stochastic Ordering and ANOVA: Theory and Applications with R” by Basso D., Pesarin F., Salmaso L., Solari A.

• R code